I'm just curious why, with that tiny bit of a difference, you wouldn't just either pull the boom back 2mm in the front clamp or pull the tail box back 2mm? Or, split the 2mm between the two and adjust it 1mm at each end? You seem really bent on wanting to make a lot of work for yourself that's probably not necessary. If you enjoy the challenge of trying to get every little thing as exact as possible, then, more power to you. The tolerance stack up of the whole TT transmission and tail boom assembly consists of the hole locations in the frame where the TT transmission mounts, the tail boom mount mounting hole locations, the transmission parts, the tail boom mount thicknesses, the tail boom length, the TT length, the TT end lengths, the hole locations in the TT end and the TT, and the tail box parts. I haven't asked Matt, to be sure, but I'm pretty sure that's one of the reasons the tail boom clamps and the tail box mount the way they do, so you have some adjustment. There are threaded holes provided in the boom clamps and the tail box so that you can get it adjusted to where you have your gear clearances and then mark that location, drill your holes, and pin the boom.
Also, what kind of metrology are you using to measure the length of these parts? Do you have an instrument that's truly capable of accurately measuring the length of these parts with sub-mm precision? Come to think of it, without having a print to look at or talking to Matt, we don't even know what kind of tolerances he has on the overall length of the TT and the hole placements. These are the reasons I'm asking, I'm not trying to be critical of what you're wanting to do. I'm just interested in your point of view and I'm also trying to save you some time and hassle for something that's so far up the slope of diminishing returns that it's just barely a blip on the chart.