I've had and seen similiar issue on a various machines in the past, some have been engine related and some have been mechanical.
Couple of things which might be worth checking if you have not already:
1. Engine - What is the condition of the rear bearing? If it has had some use it may need replacing as it could be causing the engine to run rough and causing excess vibration.
2. Head Assembly - The heads usually come pre-assembled, check to make sure the bearings are installed correctly and that they are in good condition. Also check the dampers and if necesary lightly grease them with a little silicone based grease to allow the spindle to float.
Running at low head speeds with new dampers can cause a head wobble untill they have a few flights on them and they have bedded in.
Hope this helps and let us know how you get on.
Cheers!
Ross